miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|196463691|gb|EC765680.1|EC765680 TACAAAAAGCAGGCTGGTACCGGTCCGGAATCCCGGGATATCGTCGACCCACGCGTCCGGAGAGATAAAAATGGCGGCAA
CAACATCAGCCTTATCAGCACCAACACCACTTACACGTCCACCACGCCCTCTTTCCTCTTCCACTCCCAAAACTTTCCTC
AAATTCCCATCGTACCCTTCCTTCTCCACCTCAATCTCCCACCGCGCCACTCACCTCCGTCCACTCGCCGCCGTCGAAGC
ACCAGAGAAAATCGCAGACCTCGGCGCAAAGATCTCCTCCCTCACACTCGAAGAAGCTCGTTCCCTCGTCGATTACCTTC
AAGACAAGCTCGGCGTCTCCGCCGCCGCTTTCGCTCCAGTCGCCACACCTGCCGCTCCTGGCGCCGGCGGCGGAGAAGCT
CCGGCTGTTGTAGAGGAGAAAACAGAGTTCGATGTCGTCATCGATGATGTCCCTAGCAATGCGAGGATTGCGGTGATTAA
ATCCGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAG
GTGTGTCGATGGAAGAAGCTGAGAATGCGAAGAAACAGCTTGAAGAAGCTGGAGCTAAGGT




Most similar to sp|P36210|RK121_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P36210|RK121_ARATH 50S ribosomal protein L12-1, chloroplastic
           OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1
          Length = 191

 Score =  172 bits (437), Expect = 1e-42
 Identities = 98/158 (62%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
 Frame = +2

Query: 152 TFLKFPSY--PSFSTSISHRATHLRPLAAVEAPEKIADLGAKISSLTLEEARSLVDYLQD 325
           T ++FPS      S++++HRATHLRP+AAVEAPEKI  +G++ISSLTLEEAR LVDYLQD
Sbjct: 31  TTIEFPSRFGGGSSSTLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQD 90

Query: 326 KLXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKTEFDVVIDDVPSNARIAVIKSVRALTSL 505
           K                            EE+TEFDVVI++VPS++RIAVIK+VRALTSL
Sbjct: 91  KFGVSPLSLAPAAAAVAAPADGGAAAVV-EEQTEFDVVINEVPSSSRIAVIKAVRALTSL 149

Query: 506 ALKEAKELIEGLPKKFKEGVSMEEAENAKKQLEEAGAK 619
           ALKEAKELIEGLPKKFKEG++ +EAE AKK LEEAGAK
Sbjct: 150 ALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAK 187